Photosynthesis - Dark Reaction Or Calvin Cycle || C3 Cycle

Photosynthesis - Dark Reaction Or Calvin Cycle | C3 Cycle

Introduction

You, like all organisms on Earth, are a carbon-based life form. In other words, the complex molecules of your amazing body are built on carbon backbones. You might already know that you’re carbon-based, but have you ever wondered where all of that carbon comes from?

As it turns out, the atoms of carbon in your body were once part of carbon dioxide ($\text {CO}_2$C, O, start subscript, 2, end subscript) molecules in the air. Carbon atoms end up in you, and in other life forms, thanks to the second stage of photosynthesis, known as the Calvin cycle (or the light-independent reactions).

Overview of the Calvin cycle

In plants, carbon dioxide ($\text{CO}_2$C, O, start subscript, 2, end subscript) enters the interior of a leaf via pores called stomata and diffuses into the stroma of the chloroplast—the site of the Calvin cycle reactions, where sugar is synthesized. These reactions are also called the light-independent reactions because they are not directly driven by light.

In the Calvin cycle, carbon atoms from $\text {CO}_2$C, O, start subscript, 2, end subscript are fixed (incorporated into organic molecules) and used to build three-carbon sugars. This process is fueled by, and dependent on, ATP and NADPH from the light reactions. Unlike the light reactions, which take place in the thylakoid membrane, the reactions of the Calvin cycle take place in the stroma (the inner space of chloroplasts).

This illustration shows that ATP and NADPH produced in the light reactions are used in the Calvin cycle to make sugar.

Reactions of the Calvin cycle

The Calvin cycle reactions can be divided into three main stages: carbon fixation, reduction, and regeneration of the starting molecule.

Here is a general diagram of the cycle:

Diagram of the Calvin cycle, illustrating how the fixation of three carbon dioxide molecules allows one net G3P molecule to be produced (that is, allows one G3P molecule to leave the cycle).

3 $\text {CO}_2$C, O, start subscript, 2, end subscriptmolecules combine with three molecules of the five-carbon acceptor molecule (RuBP), yielding three molecules of an unstable six-carbon compound that splits to form six molecules of a three-carbon compound (3-PGA). This reaction is catalyzed by the enzyme rubisco.

In the second stage, six ATP and six NADPH are used to convert the six 3-PGA molecules into six molecules of a three-carbon sugar (G3P). This reaction is considered a reduction because NADPH must donate its electrons to a three-carbon intermediate to make G3P.

3. Regeneration.One G3P molecule leaves the cycle and will go towards making glucose, while five G3Ps must be recycled to regenerate the RuBP acceptor. Regeneration involves a complex series of reactions and requires ATP.

[See a diagram that shows the molecular structures]

1) Fixation. For every three turns of the Calvin cycle, three atoms of carbon are fixed from three molecules of carbon dioxide. In the carbon fixation stage, carbon dioxide is attached to RuBP by the enzyme rubisco. The resulting 6-carbon product quickly splits into two molecules of a three-carbon compound (3-phosphoglycerate). When three carbon dioxide molecules enter the cycle, six molecules of 3-phosphoglycerate are produced.

2) Reduction. In the reduction stage, each 3-phosphoglycerate first gains a phosphate group from an ATP molecule (which is converted to ADP). The phosphorylated molecule is then reduced by NADPH (which is converted to NADP+ and H+) in a reaction that releases a phosphate group. The net result of this process is conversion of a 3-phosphoglycerate molecule into a molecule of the three-carbon sugar glyceraldehyde 3-phosphate (G3P). In three turns of the cycle, six molecules of G3P are produced, six ATP are converted to ADP and Pi, and six NADPH are converted to NADP+ and H+.

3) Regeneration. For every three turns, one molecule of G3P exits the cycle and goes towards making glucose. (Two G3Ps can combine to make one glucose, so one G3P can be thought of as "half" a glucose molecule.) The other five G3P molecules are recycled to regenerate three molecules of RuBP, the starting compound of the cycle. In the regeneration stage, the five G3Ps are reorganized into three five-carbon compounds through a complex series of reactions. Each five-carbon compound ultimately gains a phosphate from ATP (which is converted to ADP) to regenerate the starting molecule, RuBP. For three turns of the cycle, three RuBPs are produced and three ATPs are converted to ADP.

1. Carbon fixation. A $\text {CO}_2$C, O, start subscript, 2, end subscript molecule combines with a five-carbon acceptor molecule, ribulose-1,5-bisphosphate (RuBP). This step makes a six-carbon compound that splits into two molecules of a three-carbon compound, 3-phosphoglyceric acid (3-PGA). This reaction is catalyzed by the enzyme RuBP carboxylase/oxygenase, or rubisco.
   

   [Details of this step]

   $\text {CO}_2$C, O, start subscript, 2, end subscript$\text {CO}_2$C, O, start subscript, 2, end subscript

   

   
   

   Simplified diagram (showing carbon atoms but not full molecular structures) illustrating the reaction catalyzed by rubisco. Rubisco attaches a carbon dioxide molecule to an RuBP molecule, and the six-carbon intermediate thus produced breaks down into two 3-phosphoglycerate (3-PGA) molecules.

   $\text {CO}_2$C, O, start subscript, 2, end subscript$\text {CO}_2$C, O, start subscript, 2, end subscript

   

   
   

   Diagram showing the molecular structures of RuBP and carbon dioxide, the unstable six-carbon intermediate formed when they combine, and the two 3-PGA molecules produced by the intermediate's breakdown.
2. Reduction. In the second stage, ATP and NADPH are used to convert the 3-PGA molecules into molecules of a three-carbon sugar, glyceraldehyde-3-phosphate (G3P). This stage gets its name because NADPH donates electrons to, or reduces, a three-carbon intermediate to make G3P.
   

   [Details of this step]

   

   
   

   Simplified diagram of the reduction stage of the Calvin cycle, showing carbon atoms but not full molecular structures. A molecule of 3-PGA first receives a second phosphate group from ATP (generating ADP). Then, the doubly phosphorylated molecule receives electrons from NADPH and is reduced to form glyceraldehyde-3-phosphate. This reaction generates NADP+ and also releases an inorganic phosphate.

   • $^+$start superscript, plus, end superscript$\text P_i$P, start subscript, i, end subscript

   

   
   

   Reactions of the reduction stage of the Calvin cycle, showing the molecular structures of the molecules involved.

   $^+$start superscript, plus, end superscript
3. Regeneration. Some G3P molecules go to make glucose, while others must be recycled to regenerate the RuBP acceptor. Regeneration requires ATP and involves a complex network of reactions, which my college bio professor liked to call the "carbohydrate scramble." $^1$start superscript, 1, end superscript

In order for one G3P to exit the cycle (and go towards glucose synthesis), three $\text {CO}_2$C, O, start subscript, 2, end subscript molecules must enter the cycle, providing three new atoms of fixed carbon. When three $\text {CO}_2$C, O, start subscript, 2, end subscript molecules enter the cycle, six G3P molecules are made. One exits the cycle and is used to make glucose, while the other five must be recycled to regenerate three molecules of the RuBP acceptor.

Summary of Calvin cycle reactants and products

Three turns of the Calvin cycle are needed to make one G3P molecule that can exit the cycle and go towards making glucose. Let’s summarize the quantities of key molecules that enter and exit the Calvin cycle as one net G3P is made. In three turns of the Calvin cycle:

• Carbon. $3$3 $\text {CO}_2$C, O, start subscript, 2, end subscript combine with $3$3 RuBP acceptors, making $6$6 molecules of glyceraldehyde-3-phosphate (G3P).
  • $1$1 G3P molecule exits the cycle and goes towards making glucose.
  • $5$5 G3P molecules are recycled, regenerating $3$3 RuBP acceptor molecules.
• ATP. $9$9 ATP are converted to $9$9 ADP ($6$6 during the fixation step, $3$3 during the regeneration step).
• NADPH. $6$6 NADPH are converted to $6$6 NADP$^+$start superscript, plus, end superscript (during the reduction step).

A G3P molecule contains three fixed carbon atoms, so it takes two G3Ps to build a six-carbon glucose molecule. It would take six turns of the cycle, or $6$6$\text {CO}_2$C, O, start subscript, 2, end subscript, $18$18 ATP, and $12$12 NADPH, to produce one molecule of glucose.

Are.